Main Repository

This is the main GitHub repository for the CGAP bioinformatics pipelines (https://github.com/dbmi-bgm/cgap-pipeline-main). The repository bundles the latest stable version for each of the currently available modules.

The repository also contains:

• MetaWorkflow objects to describe pipelines that use components from multiple modules
• Basic Docker images that are used as template for most of the module specific images

Finally, there is a README that documents how to install and set up the repository to deploy the pipeline components.

Docker images

The image ubuntu-py-generic is based on Ubuntu 20.04 and contains (but is not limited to) the following software packages:

• python (3.8.12)
• OpenJDK (8.0.312)
• Miniconda3