News and Updates - Base

Version Updates

v1.1.0

  • Conversion to YAML format for portal objects
  • Added sanitize_vcf.py script to clean vcf files
  • Added BCFtools merge to merge multiple vcf files
  • Added conversion from bam to fastq
  • Added GATK LiftoverVcf
  • FileReference objects shared by multiple pipelines have been centralized in Base

v1.0.0

  • v27 -> v1.0.0, we are starting a new more comprehensive versioning system