CGAP Pipeline - SV Germline

This is the documentation for the CGAP Pipelines module for Structural Variants (SVs) in germline data. The pipeline components are bundled in the GitHub repository https://github.com/dbmi-bgm/cgap-pipeline-SV-germline.

• Overview - SV Germline
  • Docker Images
  • Pipeline Flow
  • Pipeline Parts
  • Pipeline Steps
  • References
• QC - SV Germline
  • VCF Quality Control
• News and Updates - SV Germline
  • Version Updates