CGAP Pipeline - SNV Germline

This is the documentation for the CGAP Pipelines module for Single Nucleotide Variants (SNVs) in germline data. The pipeline components are bundled in the GitHub repository https://github.com/dbmi-bgm/cgap-pipeline-SNV-germline.

• Overview - SNV Germline
  • Docker Images
  • Pipeline Flow
  • Pipeline Parts
  • Pipeline Steps
  • References
• QC - SNV Germline
  • VCF Quality Control
• News and Updates - SNV Germline
  • Version Updates