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CGAP Pipeline - SNV Germline
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CombineGVCFs
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CombineGVCFs

This step uses GATK CombineGVCFs to merge multiple g.vcf files and combines variants.

CWL: gatk-CombineGVCFs.cwl

References

GATK CombineGVCFs.

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© Copyright 2021, Michele Berselli, Phil Grayson, CGAP team, HMS DBMI. Revision 29cefcec.

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